HUGET Susie

Software Engineer

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About Me

After obtaining a Bachelor's degree in Human Biology, I pursued a Master's degree in Bioinformatics. I am passionate about software engineering, web development, and data analysis applied to biology. I am eager to apply the skills I acquired during my studies and professional experiences in a position in bioinformatics.

This website is one of my personal projects. It showcases my programming skills, particularly in HTML and CSS, and is available in French. I have included links to the various training programs I participated in, and you can contact me through my LinkedIn profile or by email.

Skills

Computer Science

Bioinformatics

Education

Master's in Bioinformatics, specialising in Computational Biology

University of Bordeaux

Honors
My first year allowed me to explore various programming languages. The different projects I participated in helped me learn algorithms used in biology as well as best practices specific to each language. I contributed to several projects in various fields such as web development, software development, data analysis, and image processing. For my final year project, I also had the opportunity to work on a robotics project, where I learned the basics of electronics and hardware programming. I completed my internship at EMBL-EBI (Hinxton, United Kingdom).

Bachelor's in Health Sciences, specialising in Human Biology and Health Technologies

University of Picardie Jules Verne

University of Cyrillus and Methodius

Honors
After my Scientific Baccalaureate, I chose to enroll in the Bachelor's in Health Sciences to broaden my skills in human biology. I also spent a year in Erasmus in Slovakia to improve my English. During this year abroad, I worked on a biology project aimed at identifying the various microorganisms present in the thermal springs of Piešťany. This year was culturally and academically enriching as the small class sizes in Slovakia allowed for excellent support and numerous opportunities for practical work in laboratories.

Scientific Baccalaureate

Madeleine Michelis High School

Honors

Brevet d'Initiation Aéronautique

Madeleine Michelis High School

Honors

Projects

The Molecular Complex Navigator (EMBL-EBI)

The European Molecular Biology Laboratory (EMBL) includes the European Bioinformatics Institute (EBI) among its establishments. The aim of EBI is to generate and centralise molecular data to make it accessible to the public. I had the opportunity to work within the team that deals with molecular networks. During my internship at the organisation, I had the chance to develop the Molecular Complex Navigator, a web tool for visualising and comparing protein complexes, available by clicking on this link. This web tool, developed in TypeScript with the Angular framework, is both performant and interactive. The integration of data such as orthology allows for the comparison of complexes across species. This required the addition of new references to the Panther database, integrated into our own database using code in Java utilising the Spring framework. This project allowed me to develop my skills in web development and communication, particularly through the various presentations I delivered (Scientific Advisory Board, EMBL-EBI Protein and Complexes Day, HUPO Conference 2024).

The XML Maker (EMBL-EBI)

Following my internship at EMBL-EBI, I had the opportunity to remain in the molecular networks team to update and enhance the XML Maker. This Java application, using the Spring framework, is an essential tool for scientific curators, allowing them to generate XML files from data provided by laboratories. The first stage of this project was the implementation of a formatter that enables curators to convert gene and protein names into UniProtKB accession numbers. This represents a considerable time-saving for curators who previously extracted this data manually. The second stage of this project, which is still ongoing, is the redesign of the XML file generator to implement the standard PSI-MI formats using an appropriate library.

The ArUbot Project (University of Bordeaux)

The objective of this project was to construct a fleet of robots detected by ArUco markers via an external camera. As part of this group project, we modelled the robot using OnShape software, and then we assembled the robots. These robots are equipped with an ESP32 microcontroller and an L298N driver that allows control of two motors.

My contribution to the project was the implementation of code on the microcontroller via the Arduino IDE (Integrated Development Environment). This IDE uses the C++ programming language, which is geared towards hardware programming. I also developed the website to control the robots, using HTML.